Scoring function for automated assessment of protein structure template quality

Science, Nature, Curr Opin Struct Biol, 2 Proteins, 3 Sali A , Blundell TL. J Mol Biol, 3 Kolinski A , Skolnick J.

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Europe PMC requires Javascript to function effectively. Recent Activity. Share This Paper. Background Citations. Methods Citations. Results Citations. Topics from this paper. Complement System Proteins Benchmark computing Bioinformatics. Citation Type. Has PDF. Publication Type. More Filters. Highly Influenced. View 8 excerpts, cites background, results and methods. Automatic protein structure prediction system enabling rapid and accurate model building for enzyme screening. Improving threading algorithms for remote homology modeling by combining fragment and template comparisons.

Computer Science, Medicine. Biophysical journal. View 2 excerpts, cites methods. Processing and analysis proteins in the benchmark set and rebuilt them using of CASP3 protein structure predictions. MaxSub: an signed to assemble full-length models by rearranging the automated measure for the assessment of protein structure predic- continuous fragments from initial template alignments tion quality. Bioinformatics ;16 9 — A method to identify protein make them closer to the native structure. The results are sequences that fold into a known three-dimensional structure.

Science ; — A new approach to protein ELLER, although the average correlations of all the three fold recognition. Nature ; — Statistics of sequence-structure thread- Holm L, Sander C. Dali: a network tool for protein structure ing. Curr Opin Struct Biol ;5 2 — Trends Biochem Sci ;20 11 — Development and large scale Proteins ;— Fold Des ;3 2 — Sali A, Blundell TL. Comparative protein modelling by satisfac- Gerstein M, Levitt M. Using iterative dynamic programming to tion of spatial restraints.

J Mol Biol ; 3 — Kolinski A, Skolnick J. Assembly of protein structure from sparse structures. Proteins Kihara D, Skolnick J. The PDB is a covering set of small protein ;32 4 — J Mol Biol ; 4 — Aszodi A, Taylor WR. Homology modelling by distance geometry. Biophysics J Fold Des ;1 5 — Prediction of the three-dimen- Modeling of loops in protein structures. Kabsch W. A solution for the best rotation to relate two sets of glycine cleavage system: a new automated method for the predic- vectors.

Acta Cryst ;A Protein Sci ;2 4 — A discussion of the solution for the best rotation to A new method for building protein conforma- relate two sets of vectors.

Zemla A. J Mol Biol ; 1 :1—7. Nucleic Acids Res ;31 13 — Srinivasan N, Blundell TL. An evaluation of the performance of an A automated procedure for comparative modelling of protein ter- study of quality measures for protein threading models.